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CIS 14 min read

CIS Refunds: Why You’re Owed Money (and Why It Takes So Long)

If you work under CIS, there’s a strong chance HMRC owes you money. The problem isn’t whether you’re due a refund — it’s whether you’re claiming the full amount. Every year, subcontractors leave thousands behind through missed expenses, rushed returns and poor record-keeping. Here’s what’s really happening, why refunds drag on, and how to stop overpaying.

123

The 123 Tax Team

Published 2 March 2026

Let’s talk straight.

If you’re a CIS subcontractor, you are almost certainly overpaying tax during the year.

That 20% coming off your gross pay? It’s not your final bill. It’s a blunt advance payment based on turnover — not profit.

And profit is what actually matters.

The CIS System Was Never Designed to Be Accurate

CIS deductions are calculated on the amount you’re paid for labour.

They don’t consider:

  • Your mileage to site
  • Your van repairs
  • Your insurance
  • Your training
  • The tools you replace every few months
  • Your phone bill
  • Your accountant

All of that reduces your profit. But none of it reduces the 20% taken at source.

So what happens?

You overpay all year. Then you settle up through Self Assessment.

How Much Are We Talking?

Across the industry, typical CIS refunds regularly land between £2,000 and £3,000 per year for subcontractors working consistently.

That’s not a marketing number. It’s a reflection of how the system works.

£2k–£3k

Typical annual CIS refund

800k+

Active CIS subcontractors in the UK

Even if only half are due an average refund of £2,000, that’s hundreds of millions sitting temporarily with HMRC every year.

The real issue? Many subcontractors don’t get the full refund they’re entitled to.

The Hidden Problem: Missed Expenses

Here’s where it gets uncomfortable.

Most CIS workers don’t track everything properly. Not because they’re careless. Because they’re busy working.

When you’re on site at 7am, you’re not thinking about:

  • Logging 42 miles to a temporary site
  • Splitting your mobile bill between business and personal
  • Recording that £68 spent on safety boots
  • Tracking van servicing
  • Separating materials from labour

So what happens in January? You try to remember.

And memory is expensive.

The 10 Expenses CIS Subcontractors Forget Most Often

If this list makes you pause, it’s probably costing you money.

Are you claiming these?
01

Mileage to temporary sites

Not commuting to a permanent workplace — but site-to-site travel absolutely counts.

02

Small consumables

Drill bits, blades, fixings, PPE replacements — the stuff you buy without thinking.

03

Safety clothing and protective gear

Hi-vis, steel-toe boots, hard hats, gloves — anything you wear for site safety.

04

Van servicing, tyres and repairs

If your van is used for work, the running costs are deductible.

05

Tool replacement

Not just new purchases — replacing worn-out or broken tools counts too.

06

Public liability insurance

A business cost that many subcontractors forget to include.

07

Trade memberships or certification fees

CSCS, Gas Safe, NICEIC, trade body memberships — all allowable.

08

Mobile phone business usage

The business proportion of your phone bill is a legitimate claim.

09

Training courses required for your trade

Courses that maintain or update your existing skills for your current trade.

10

Accountancy fees

Yes — the cost of getting your tax done is itself a deductible expense.

The bottom line on expenses

Individually, these look small. Collectively, they can reduce your taxable profit by thousands. Which means they increase your refund by thousands.

Why Refunds Take So Long

Even when everything is done properly, CIS refunds don’t always move quickly. Here’s why:

1. HMRC Has to Match Everything

Your tax return must align with:

  • Contractor CIS submissions
  • Your UTR
  • Your deduction statements

If there’s any mismatch — even minor — it triggers manual checks. Manual checks mean delay.

2. Refunds Are Flagged

Large refunds can trigger additional verification.

First-time claims? More checks.

Changes in income patterns? More checks.

Inconsistent figures? More checks.

The system is cautious.

3. Paper-Based Habits Slow Everything Down

If you’re still sending paperwork late, guessing totals, or submitting incomplete returns — you’re increasing the chances of a query.

Every query adds weeks.

The Real Cost of “Doing It Quickly”

Here’s the honest conversation.

When subcontractors file their own returns in a rush, they tend to:

  • Round expenses down
  • Leave things out
  • Avoid claiming anything they’re unsure about
  • Submit before reconciling CIS statements

That reduces your refund. Quietly. And permanently.

Once you submit, you’re locked in unless you amend.

Most don’t.

Where 123 Tax Actually Makes a Difference

We don’t just “file a return”.

We:

  • Reconcile your CIS statements properly
  • Review expense categories thoroughly
  • Ask questions most people don’t ask
  • Make sure your figures match HMRC’s records
  • Submit cleanly to avoid avoidable delays

Think about it this way

If you’re doing it yourself and under-claiming £1,500–£3,000 a year, that’s not saving money. That’s paying too much tax. And over five years? That’s the cost of a van.

The Bigger Picture

CIS refunds aren’t a bonus. They’re your money being returned because the system is designed to over-collect during the year.

The difference between a rushed claim and a properly structured one can be significant.

Most subcontractors assume their refund is “whatever HMRC calculates”. It isn’t. It’s whatever your records support.

And if your records aren’t complete, your refund won’t be either.

Bottom Line

If you’re under CIS:

1

You’re likely owed money

2

You’re probably not claiming every allowable expense

3

Your refund might be smaller than it should be

Getting it right isn’t about pushing boundaries. It’s about claiming what you’re legally entitled to. And making sure you don’t leave money behind because you were too busy earning it.

Think you’ve been under-claiming?

123 Tax can review your last return and show you exactly where you stand. No jargon. No drama. Just clarity.

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